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Table 4 Mean linkage disequilibrium (r2) within different inter-marker distances in the simulated populations used for the comparison of the accuracy of genomic predictions with and without imputation

From: Enlarging a training set for genomic selection by imputation of un-genotyped animals in populations of varying genetic architecture

Scenario

Inter-marker distance (kb)

<25

25-50

50-75

75-120

120-200

200-500

LowLD_NoSel

0.14

0.12

0.10

0.08

0.06

0.03

LowLD_Sel

0.21

0.19

0.18

0.16

0.14

0.12

HighLD_NoSel

0.36

0.30

0.26

0.22

0.17

0.11

HighLD_Sel

0.43

0.37

0.32

0.29

0.24

0.18

  1. Values are the means across 10 replicates.
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Genetics Selection Evolution

ISSN: 1297-9686