Analysis of conservation priorities of Iberoamerican cattle based on autosomal microsatellite markers

Ginja, Catarina; Gama, Luís T; Cortes, Óscar; Delgado, Juan Vicente; Dunner, Susana; García, David; Landi, Vincenzo; Martín-Burriel, Inmaculada; Martínez-Martínez, Amparo; T Penedo, M Cecília; Rodellar, Clementina; Zaragoza, Pilar; Cañon, Javier

doi:10.1186/1297-9686-45-35

Genetics Selection Evolution

Table 4 Contributions of Creole cattle breeds to diversity according to Caballero and Toro[20] and Fabuel et al.[35]

From: Analysis of conservation priorities of Iberoamerican cattle based on autosomal microsatellite markers

Group	Breed	f _ii	D_Nei	¹Contribution to f	¹Contribution to D	GDT\|i	¹loss/gain (%)	¹PC_weighted	²PC_unweighted
Creole1	CRA	0.329	0.094	0.014	0.044	0.806	0.2	5.430	3.643
Creole1	PAT	0.339	0.106	0.009	0.031	0.805	0.1	3.813	3.655
Creole1	CAR	0.300	0.097	0.011	0.043	0.803	-0.1	5.321	3.798
Creole1	CRU	0.335	0.097	0.012	0.038	0.805	0.1	4.656	3.632
Creole2	BON	0.319	0.084	0.007	0.022	0.805	0.1	2.716	3.644
Creole2	HVA	0.234	0.058	0.004	0.021	0.804	0.0	2.578	3.931
Creole2	LUC	0.302	0.081	0.006	0.021	0.804	0.0	2.656	3.713
Creole2	PCH	0.237	0.065	0.010	0.048	0.803	-0.1	5.884	3.948
Creole3	CCC	0.344	0.111	0.007	0.022	0.804	0.0	2.727	3.659
Creole3	RMS	0.344	0.118	0.006	0.022	0.804	0.0	2.750	3.690
Creole4	GUA	0.354	0.127	0.007	0.022	0.803	-0.1	2.745	3.683
Creole4	GYM	0.255	0.066	0.008	0.034	0.804	0.0	4.151	3.868
Creole5	SMA	0.298	0.080	0.006	0.022	0.804	0.0	2.778	3.728
Creole5	CBC	0.266	0.071	0.005	0.019	0.804	0.0	2.401	3.835
Creole5	CHU	0.246	0.067	0.004	0.018	0.804	0.0	2.216	3.913
Creole5	CNY	0.229	0.066	0.004	0.023	0.803	-0.1	2.852	3.987
Creole5	CPO	0.236	0.063	0.008	0.041	0.803	-0.1	5.057	3.945
Creole5	TLH	0.266	0.064	0.019	0.073	0.806	0.2	9.060	3.799
Creole6	CAQ	0.233	0.064	0.005	0.024	0.803	-0.1	2.952	3.961
Creole6	CHS	0.236	0.068	0.005	0.024	0.803	-0.1	2.956	3.967
Creole6	VEL	0.249	0.085	0.005	0.024	0.803	-0.1	2.966	3.981
Creole6	CUB	0.251	0.095	0.009	0.048	0.801	-0.4	5.999	4.025
Creole6	SIB	0.246	0.108	0.008	0.049	0.799	-0.6	6.123	4.108
Creole6	ECU	0.262	0.092	0.002	0.011	0.803	-0.1	1.414	3.954
Creole6	CHI	0.226	0.066	0.006	0.029	0.803	-0.1	3.578	4.001
Creole6	PIL	0.242	0.068	0.007	0.034	0.804	0.0	4.222	3.935

Average coancestries (f_ii) and Nei’s genetic distances (D_Nei), contributions to global coancestry (f) and to average Nei’s distance (D), global coancestry (GDT|i) and proportional loss or gain in genetic diversity after removing each breed, proportional contributions (PC) to a pool of maximum genetic diversity weighted and unweighted by sample sizes; values for the five breeds with the highest contributions are shown in bold, except for GDT|i and loss/gain for which only the two highest values are in bold.; geographical breed groups and breed acronyms are defined in Table 1; ¹average coancestries weighted by sample sizes; ²average coancestries estimated by ignoring sample sizes; mean coancestry within-breeds, f = 0.275; mean Nei’s minimum distance in the metapopulation, D = 0.083; mean coancestry in the metapopulation, f = 0.197; global genetic diversity of the metapopulation, GDT = 0.804.

Back to article page

ISSN: 1297-9686

Contact us

Submission enquiries: helene.hayes@inrae.fr
General enquiries: info@biomedcentral.com