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Table 4 Results of single-QTL analysis

From: Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F2 intercross between fat and lean chicken lines

Trait

GGA

Loc (cM)

CI (cM)

Nearest markers

SL

QTL effect

HS

Ref

ShD

1

80.5

76 - 85

rs14803813 - rs14805816

*

0.59 ± 0.17

3

-

IGF-I

1

149.5

141 - 153

rs13870138 - RBL3072

***, $

0.55 ± 0.10

4

[26, 27]

ThP

1

159.5

150 - 165

rs14831825 - rs14833110

*

0.52 ± 0.11

3

-

BMW min

2

234

232 - 240

rs14231442 - rs14231751

***, $

0.69 ± 0.54

2

-

T b

2

263

256 - 267

rs13730256 - rs14246372

*

0.62 ± 0.46

2

-

BW7

3

97

92 - 100

rs14334468 - rs15316026

*

0.62 ± 0.18

2

-

ShL

3

174

163 - 180

rs14378036 - rs15394046

*

0.44 ± 0.15

4

-

Glucose

3

189

184 - 194

rs15406274 - rs14385386

*

0.47 ± 0.19

4

-

BW5

3

250

247 - 257

rs15452125 - rs14410153

*

0.65 ± 0.26

3

[28]

BMW maj

4

22

16 - 30

rs14421644 - rs14423272

*

0.42 ± 0.16

4

-

BMP

4

22

16 - 28

rs14421644 - rs14423272

*

0.49 ± 0.16

3

-

BW7

4

159

145 - 166

rs14707369 - rs14492188

*

0.60 ± 0.11

2

[29]

BW5

4

160

149 - 166

rs14492188 - rs13664708

*

0.57 ± 0.20

2

[30]

T b

5

119.9

119 - 121

rs15730058 - rs15731150

***, $

0.75 ± 0.52

2

-

ThW

6

79

71 - 82

rs15806906 - rs14588414

*

0.45 ± 0.27

3

-

ThP

6

79

72 - 82

rs15806906 - rs14588414

*

0.57 ± 0.23

2

-

Glucose

7

4

0 - 13

rs15824390 - rs13739121

*

0.42 ± 0.09

4

-

BMW min

7

34

31 - 56

rs14605238 - rs14605963

*

1.03

1

[31]

BMW maj

7

39

30 - 66

rs14606550 - rs15844013

*

0.49 ± 0.27

3

[31]

BMP

7

39

31 - 58

rs14606550 - rs15844013

*

0.49 ± 0.35

3

-

ThW

8

5.9

0 - 13

RBL4827 - rs14635367

*

0.50 ± 0.19

3

-

ThP

8

62.9

56 - 77

rs15925157 - rs15927400

**

0.47 ± 0.33

3

-

BMWmin

9

62

57 - 69

rs15977388 - rs15978241

*

0.42 ± 0.19

4

-

BMWmaj

9

66

59 - 82

rs14677393 - RBL2391

*

0.65 ± 0.07

2

-

BMP

9

66

61 - 70

rs14677393 - RBL2391

***, $

0.55 ± 0.24

3

-

AFP

10

59.8

56 - 68

rs14009177 - MCW0035

*

0.60 ± 0.17

2

-

AFW

10

62.8

56 - 75

rs14009888 - rs14010538

*

0.65 ± 0.02

2

-

T b

11

36

31 - 44

rs14025158 - rs15617411

**

0.44 ± 0.11

4

-

Glucose

18

30.2

23 - 38

rs14110229 - ADL0184

***, $

0.52 ± 0.19

4

-

ShD

19

18

0 - 22

rs14116183 - rs15837334

***, $

0.54 ± 0.16

3

-

BMW min

19

41

35 - 49

rs14120685 - RBL1230

*

0.47 ± 0.01

2

-

AFW

19

52

48 - 53

rs15855444 - rs14124107

***, $

0.52 ± 0.27

3

[32]

AFP

19

52

47 - 53

rs15855444 - rs14124107

***, $

0.52 ± 0.25

3

[32]

BW5

20

3.3

1 - 6

LEI0080 - rs14268358

*

0.60 ± 0.18

3

-

BW7

20

3.3

1 - 6

LEI0080 - rs14268358

*

0.60 ± 0.12

3

-

AFW

20

51.3

29 - 52

rs16175432 - rs14280613

*

0.60 ± 0.09

2

-

AFP

20

51.3

28 - 52

rs16175432 - rs14280613

*

0.59 ± 0.09

2

-

NEFA

21

34

31 - 36

RBL2361 - rs15184064

*

0.54 ± 0.19

4

-

AFW

26

45

18 - 46

rs16204669 - ADL0285

*

0.45 ± 0.12

3

-

ShD

27

28

19 - 36

RBL2860 - rs14303776

*

0.46 ± 0.32

3

-

ShL

27

32

18 - 40

rs14303776 - RBL4014

*

0.51 ± 0.22

3

-

ThP

27

48

33 - 53

ADL0376 - RBL10518

*

0.60 ± 0.18

3

-

AFW

27

51

47 - 53

ADL0376 - RBL10518

*

0.55 ± 0.25

3

-

AFP

27

51

47 - 53

ADL0376 - RBL10518

**

0.50 ± 0.26

4

[33]

ShL

28

41

28 - 51

MCW0227 - rs13726077

*

0.59 ± 0.19

2

-

BMP

28

51

47 - 51

rs14307413 - rs16212250

*

0.45 ± 0.25

3

-

BMW min

Z

88.9

86 - 99

RBL3035 - rs16110306

***, $

0.59 ± 0.32

4

-

  1. Traits are described in Table 1; GGA Gallus gallus chromosome, Loc location, CI confidence interval, SL significance level with * at 5%, ** at 1%, *** at 0.1% chromosome-wide and $ at 5% genome-wide, QTL effect substitution effect expressed in residual standard deviation. HS number of heterozygous sires out of 5. Ref publications describing similar QTL affecting the same trait and presenting a similar genomic location.