The effect of using genealogy-based haplotypes for genomic prediction

Table 2 Accuracy of genomic predictions (ACC) and standard errors (SE) for three traits

Prediction method	Fertility		Protein yield		Mastitis
Prediction method	ACC	SE	ACC	SE	ACC	SE
Individual marker prediction
GBLUP	0.599	0.013	0.646	0.016	0.622	0.013
BayesC π = 0.999	0.521	0.024	0.558	0.023	0.526	0.023
BayesC π = 0.99	0.574	0.023	0.625	0.022	0.595	0.022
BayesCπ	0.596	0.023	0.650	0.021	0.629	0.021
π	0.91		0.91		0.90
BayesBπ	0.594	0.023	0.651	0.021	0.623	0.021
BayesB π = 0.99	0.570	0.023	0.624	0.022	0.586	0.022
Haplotype prediction
GBLUP	0.596	0.013	0.651	0.016	0.628	0.013
BayesC π = 0.999	0.566	0.023	0.611	0.022	0.575	0.022
BayesC π = 0.99	0.598	0.023	0.656	0.021	0.629	0.021
BayesCπ	0.596	0.023	0.658	0.021	0.629	0.021
π	0.90		0.97		0.89
BayesBπ	0.593	0.023	0.657	0.021	0.633	0.021
BayesB π = 0.99	0.595	0.023	0.651	0.021	0.624	0.021

ISSN: 1297-9686