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Table 1 R 2 +/- standard deviation across replicates between inferred and true results, and percentage of assigned results using simulated data (dataset B)

From: Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes

  Half-sib family size
  4 6 8 10 20 40
1250 SNPs
PS 0. 55 ± 0. 37 0. 65 ± 0. 29 0. 68 ± 0. 27 0. 77 ± 0. 17 0. 84 ± 0. 07 0. 84 ± 0. 04
PS% 0. 94 ± 0. 13 0. 96 ± 0. 04 0. 97 ± 0. 02 0. 97 ± 0. 03 0. 97 ± 0. 03 0. 98 ± 0. 02
PSe 0. 52 ± 0. 36 0. 64 ± 0. 29 0. 66 ± 0. 27 0. 75 ± 0. 17 0. 83 ± 0. 07 0. 83 ± 0. 04
PSe% 0. 96 ± 0. 06 0. 96 ± 0. 04 0. 97 ± 0. 02 0. 97 ± 0. 03 0. 98 ± 0. 03 0. 98 ± 0. 02
SI 0. 74 ± 0. 25 0. 81 ± 0. 18 0. 84 ± 0. 17 0. 90 ± 0. 11 0. 97 ± 0. 03 0. 99 ± 0. 00
SI% 0. 51 ± 0. 09 0. 71 ± 0. 06 0. 82 ± 0. 05 0. 88 ± 0. 03 0. 98 ± 0. 02 1. 00 ± 0. 00
SIe 0. 72 ± 0. 23 0. 80 ± 0. 18 0. 82 ± 0. 18 0. 89 ± 0. 11 0. 97 ± 0. 03 0. 99 ± 0. 01
SIe% 0. 53 ± 0. 06 0. 71 ± 0. 06 0. 82 ± 0. 05 0. 89 ± 0. 03 0. 98 ± 0. 02 1. 00 ± 0. 00
5000 SNPs
PS 0. 55 ± 0. 36 0. 74 ± 0. 32 0. 86 ± 0. 19 0. 91 ± 0. 07 0. 93 ± 0. 03 0. 94 ± 0. 02
PS% 0. 95 ± 0. 10 0. 97 ± 0. 03 0. 98 ± 0. 03 0. 98 ± 0. 02 0. 98 ± 0. 02 0. 98 ± 0. 02
PSe 0. 56 ± 0. 36 0. 74 ± 0. 33 0. 87 ± 0. 22 0. 92 ± 0. 12 0. 95 ± 0. 04 0. 95 ± 0. 02
PSe% 0. 98 ± 0. 03 0. 98 ± 0. 02 0. 99 ± 0. 02 0. 99 ± 0. 02 0. 99 ± 0. 02 0. 99 ± 0. 01
SI 0. 74 ± 0. 23 0. 86 ± 0. 20 0. 93 ± 0. 12 0. 97 ± 0. 04 0. 99 ± 0. 01 1. 00 ± 0. 00
SI% 0. 50 ± 0. 07 0. 70 ± 0. 07 0. 81 ± 0. 05 0. 88 ± 0. 04 0. 98 ± 0. 01 1. 00 ± 0. 00
SIe 0. 71 ± 0. 22 0. 83 ± 0. 20 0. 91 ± 0. 13 0. 95 ± 0. 05 0. 99 ± 0. 01 1. 00 ± 0. 00
SIe% 0. 51 ± 0. 04 0. 70 ± 0. 07 0. 81 ± 0. 05 0. 88 ± 0. 04 0. 98 ± 0. 01 1. 00 ± 0. 00
10 000 SNPs
PS 0. 58 ± 0. 38 0. 77 ± 0. 32 0. 90 ± 0. 19 0. 93 ± 0. 10 0. 96 ± 0. 03 0. 96 ± 0. 02
PS% 0. 95 ± 0. 13 0. 98 ± 0. 02 0. 99 ± 0. 02 0. 99 ± 0. 02 0. 99 ± 0. 02 0. 99 ± 0. 01
PSe 0. 48 ± 0. 36 0. 71 ± 0. 33 0. 84 ± 0. 21 0. 90 ± 0. 09 0. 92 ± 0. 04 0. 92 ± 0. 04
PSe% 0. 97 ± 0. 04 0. 98 ± 0. 03 0. 98 ± 0. 03 0. 98 ± 0. 02 0. 98 ± 0. 02 0. 98 ± 0. 02
SI 0. 75 ± 0. 25 0. 87 ± 0. 20 0. 95 ± 0. 11 0. 97 ± 0. 06 1. 00 ± 0. 01 1. 00 ± 0. 00
SI% 0. 50 ± 0. 09 0. 69 ± 0. 06 0. 80 ± 0. 06 0. 88 ± 0. 06 0. 99 ± 0. 01 1. 00 ± 0. 00
SIe 0. 75 ± 0. 22 0. 85 ± 0. 20 0. 93 ± 0. 12 0. 96 ± 0. 06 0. 99 ± 0. 01 1. 00 ± 0. 00
SIe% 0. 52 ± 0. 06 0. 69 ± 0. 06 0. 80 ± 0. 05 0. 88 ± 0. 05 0. 99 ± 0. 01 1. 00 ± 0. 00
  1. 120 half-sib families with varying numbers of offspring per family (between 4 and 40) and different SNP marker densities were used; PS: paternal strand detection; PS%: percentage of markers assigned to paternal strands; PSe: paternal strand detection with 1% genotyping error; PSe%: percentage of markers assigned to paternal strands with 1% genotyping error; SI: sire genotype imputation, SI%: percentage of sire markers imputed; SIe: sire genotype imputation with 1% genotyping error, SIe%: percentage of sire markers imputed with 1% genotyping error.