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Table 3 Mean squared error (MSE) of genomic predictions for 15 traits 2 of Bos indicus (Nellore) cattle based on different prediction methods

From: Accuracy of genomic predictions in Bos indicus (Nellore) cattle

 

MSE1

Trait3

GBLUP0

GBLUP20

BayesC

BLASSO

WG

164.1

165.0

212.6

209.6

Cw

0.7

0.70

0.8

0.9

Pw

0.9

0.9

1.2

1.3

Mw

0.8

0.8

1.1

1.2

Nw

0.3

0.3

0.5

0.7

PWG

194.4

192.6

291.0

335.7

Cy

0.8

0.8

1.2

1.3

Py

0.9

0.9

2.0

2.7

My

0.8

0.8

1.4

1.8

Ny

0.3

0.3

0.6

0.8

SCaw

6.1

6.0

6.0

5.8

BW

5.5

5.4

5.3

5.3

GL

48.9

48.4

47.6

47.5

WI

1029.4

1031.3

1409.1

1602.1

FI

708.5

704.1

1415.0

1568.9

  1. 1MSE: mean squared prediction error. MSE = 1 N DGV - dEBV 2 ; this statistic was calculated considering the bulls in the testing set, under the forward prediction design; 2 WG = weight gain from birth to weaning (about 205 days of age); Cw, Pw, Mw, Nw = visual scores taken at weaning for carcass conformation, finishing precocity, muscling and navel, respectively; PWG = weight gain from weaning to yearling (about 550 days of age); Cy, Py, My, Ny = visual scores taken at yearling for carcass conformation, finishing precocity, muscling and navel, respectively; SCaw = scrotal circumference adjusted for age and weight; BW = birth weight; GL = gestation length; WI: weaning index, composed by traits evaluated at weaning; FI = final index, composed of traits evaluated at weaning and yearling (FI) [See Additional file 1 for more details].