Table 3 Concordant polymorphisms for QTL that were clustered in two or more than two groups
From: Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology
QTL | indiv | conc | intg | intr | down | up | other | full | genes |
|---|---|---|---|---|---|---|---|---|---|
2 groups | |||||||||
4 | 58 | 42 | 4 | 37 | 0 | 1 | 0 | 0 | VPS13B, OSR2 |
6 | 64 | 15 | 0 | 12 | 3 | 0 | 0 | 0 | MAP2K6 |
9 | 59 | 8 | 0 | 7 | 1 | 0 | 0 | 1 | ADARB2, miRNA |
11 | 65 | 27 | 24 | 0 | 3 | 0 | 0 | 0 | 5S rRNA |
12 | 43 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | - |
14 | 58 | 102 | 100 | 0 | 0 | 2 | 0 | 22 | RAP1GAP2 |
15 | 59 | 340 | 115 | 197 | 0 | 28 | 0 | 6 | BTRC, LBX1 |
18 | 59 | 63 | 63 | 0 | 0 | 0 | 0 | 1 | - |
19 | 59 | 35 | 0 | 35 | 0 | 0 | 0 | 0 | COL11A1 |
20 | 59 | 65 | 65 | 0 | 0 | 0 | 0 | 0 | - |
>2 groups | |||||||||
1 | 40 | 327 | 265 | 42 | 4 | 12 | 4 | 0 | SLC35B3, EEF1E1, BLOC1S5, TXNDC5, 5S rRNA, BMP6, U6, DSP, RIOK1, CAGE1, SSR1, RREB1 |
3 | 37 | 52 | 40 | 8 | 2 | 1 | 1 | 0 | TANC2, ACE3, SCN4A, ICAM2, ERN1, miRNA |
7 | 46 | 411 | 197 | 126 | 39 | 47 | 2 | 0 | PCBP3, 5S rRNA |
13 | 34 | 31 | 7 | 21 | 3 | 0 | 0 | 3 | BRD3, EHMT1, ARRDC1, MRPL41, WDR85, PNPLA7, NELF, EXD3 |
17 | 29 | 187 | 113 | 71 | 3 | 0 | 0 | 97 | KAT6B, KCNMA1, pseudogene |