Figure 4

Distance to the nearest SNP on the BovineHD beadchip versus mean imputation reliability. Distance to the nearest SNP on the BovineHD beadchip versus mean imputation reliability for imputation from the BovineHD panel to whole-genome sequence data on BTA1 for the three scenarios (S40, S60, and S80); SNPs were grouped in bins of 1000 SNPs with similar distance; the predicted LD $\left({\mathit{r}}_{\mathit{\text{dist}}}^2\right)$ was calculated with assumed effective population sizes (Ne) of 100 (dashed line) and 1000 (solid line).