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Figure 1 | Genetics Selection Evolution

Figure 1

From: Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals

Figure 1

Imputation accuracy of different methods for choosing animals for dense genotyping when using Beagle for Ne = 100. Figure 1a shows the true call rate and the correlation between true and imputed genotypes for, D = 100, and 200 SNP/Morgan with T = 200 and MAF ≥ 0.05; closed symbols with solid lines and open symbols with dashed lines denote the true call rate and correlation respectively; green, red and blue denote 200, 100 and 50 SNPs/Morgan. Figure 1b shows the correlation between true and imputed genotypes for when D = 50 markers per Morgan for different T and MAF thresholds; closed symbols with solid lines and open symbols with dashed lines are T = 200 and 100, respectively; black, dark and light grey denote thresholds of 0.10, 0.05 and 0.00, respectively. The mean standard error of the correlation coefficients for both Figure 1a and b ranged from 2.83x10-4 to 1.78x10-3.

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Genetics Selection Evolution

ISSN: 1297-9686