Genetics Selection Evolution

Table 3 Correlation between allele frequencies estimated from pooled samples ( $\hat{f}$ ) and allele frequencies estimated from individual samples ( f *)

From: Quantitative analysis of low-density SNP data for parentage assignment and estimation of family contributions to pooled samples

Pool	Shrimp	Generation	Shrimp genotyped	SNP in $\hat{f}$	$r (\hat{f}, f^{*})$
1	24	G10	98%	50	0.97
2	24	G10	98%	51	0.96
3	23	G10	97%	52	0.97
4	22	G10	95%	52	0.95
5	22	G10	99%	41	0.9
6	22	G10	98%	51	0.94
7	23	G10	93%	41	0.92
8	18	G10	98%	52	0.98
9	24	G9	65%	51	0.9
10	24	G9	73%	49	0.93
11	24	G9	66%	52	0.93
12	23	G9	70%	48	0.95
13	24	G9	68%	49	0.95
14	24	G9	78%	46	0.92
15	24	G9	83%	48	0.92
16	23	G9	75%	50	0.94
17	24	G9	86%	48	0.95
18	24	G9	65%	52	0.93
19	24	G9	79%	50	0.94

“Shrimp genotyped” is the mean number of shrimp contributing to the estimate of f *, expressed as a percentage of the number of shrimp in the pool, and “SNP in $\hat{f}$ ” is the number of SNP without missing values in $\hat{f}$ .

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ISSN: 1297-9686

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