Table 4 Differences between the mean of the de-regressed EBV and the mean GEBV of the validation bulls
From: Genomic prediction of breeding values using previously estimated SNP variances
Trait | Scenario | BSSVS | BayesC | RR-BLUP | BLUP-SSVS | BLUP-C |
|---|---|---|---|---|---|---|
Protein | FULL | −0.12 | −0.13 | −0.13 | −0.13 | −0.13 |
RAN50 | 0.24 | 0.24 | 0.21 | −0.13 | −0.13 | |
TOP50 | −0.17 | −0.17 | −0.20 | −0.08 | −0.09 | |
BOT50 | 1.76 | 1.77 | 1.66 | −0.11 | −0.11 | |
UD | FULL | −0.08 | −0.09 | −0.10 | −0.09 | −0.09 |
RAN50 | 0.16 | 0.15 | 0.14 | −0.08 | −0.09 | |
TOP50 | −0.19 | −0.19 | −0.18 | −0.06 | −0.06 | |
BOT50 | 1.51 | 1.53 | 1.34 | −0.04 | −0.04 | |
SCS | FULL | −0.07 | −0.07 | −0.09 | −0.07 | −0.08 |
RAN50 | 0.10 | 0.10 | 0.09 | −0.08 | −0.08 | |
TOP50 | −0.45 | −0.45 | −0.45 | −0.06 | −0.06 | |
BOT50 | 0.99 | 0.98 | 0.86 | −0.03 | −0.03 | |
IFL | FULL | −0.15 | −0.15 | −0.16 | −0.15 | −0.15 |
RAN50 | −0.18 | −0.18 | −0.20 | −0.15 | −0.15 | |
TOP50 | −1.16 | −1.16 | −1.09 | −0.15 | −0.15 | |
BOT50 | 0.29 | 0.29 | 0.23 | −0.16 | −0.16 | |
DLO | FULL | −0.27 | −0.27 | −0.25 | −0.27 | −0.27 |
RAN50 | −0.03 | −0.04 | −0.04 | −0.28 | −0.28 | |
TOP50 | −0.46 | −0.46 | −0.45 | −0.26 | −0.25 | |
BOT50 | 1.40 | 1.39 | 1.27 | −0.25 | −0.25 | |
LON | FULL | −0.29 | −0.29 | −0.27 | −0.29 | −0.29 |
RAN50 | −0.09 | −0.09 | −0.10 | −0.30 | −0.30 | |
TOP50 | −0.49 | −0.48 | −0.48 | −0.28 | −0.28 | |
BOT50 | 1.41 | 1.41 | 1.29 | −0.26 | −0.26 |