Table 5 Correlations between genomic breeding values obtained with different models and a training dataset that includes all three lines
From: Genomic prediction based on data from three layer lines: a comparison between linear methods
Line | Method | GBLUP_VR | GBLUP_%id | RRBLUP | RRPCA | BSSVS | BayesC |
|---|---|---|---|---|---|---|---|
B1 | BLUP | 0.37 | 0.46 | 0.49 | 0.48 | 0.43 | 0.42 |
GBLUP_VR | 0.97 | 0.96 | 0.88 | 0.96 | 0.96 | ||
GBLUP_%id | 0.98 | 0.92 | 0.97 | 0.97 | |||
RRBLUP | 0.93 | 0.98 | 0.98 | ||||
RRPCA | 0.90 | 0.90 | |||||
BSSVS | 1.00 | ||||||
B2 | BLUP | 0.46 | 0.54 | 0.53 | 0.44 | 0.51 | 0.51 |
GBLUP_VR | 0.98 | 0.96 | 0.89 | 0.96 | 0.96 | ||
GBLUP_%id | 0.97 | 0.91 | 0.96 | 0.96 | |||
RRBLUP | 0.93 | 0.98 | 0.98 | ||||
RRPCA | 0.91 | 0.91 | |||||
BSSVS | 1.00 | ||||||
W1 | BLUP | 0.73 | 0.77 | 0.78 | 0.73 | 0.75 | 0.75 |
GBLUP_VR | 0.98 | 0.98 | 0.96 | 0.99 | 0.99 | ||
GBLUP_%id | 1.00 | 0.97 | 0.99 | 0.99 | |||
RRBLUP | 0.98 | 0.99 | 0.99 | ||||
RRPCA | 0.97 | 0.97 | |||||
BSSVS | 1.00 |