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Table 2 Imputation accuracies on chromosome ECA31 using Beagle with different parameter settings

From: Imputation of sequence level genotypes in the Franches-Montagnes horse breed

Accuracy

Prephasing

Pedigree

0.717

no

no

0.743

yes

no

0.753

yes

yes

  1. Three different parameter settings for Beagle were evaluated; pre-phasing of the reference population was optionally performed in a separate step using Beagle; the accuracy was also determined with and without feeding pedigree data (duos and trios) into the program.
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Genetics Selection Evolution

ISSN: 1297-9686