Table 1 Means and standard errors of accuracies and biases of GEBV obtained from four methods for populations with different thresholds of MAF for markers and QTL in Data I

> 0

> 0

0.750 _{± 0.003}

0.676 _{± 0.004}

0.725 _{± 0.005}

0.720 _{± 0.005}

> 0.10

< 0.10

0.704 _{± 0.004}

0.623 _{± 0.006}

0.669 _{± 0.005}

0.665 _{± 0.005}

> 0.10

> 0

0.760 _{± 0.004}

0.669 _{± 0.005}

0.751 _{± 0.005}

0.751 _{± 0.005}

> 0

< 0.10

0.721 _{± 0.003}

0.649 _{± 0.004}

0.671 _{± 0.005}

0.661 _{± 0.005}

> 0.15

< 0.05

0.699 _{± 0.005}

0.643 _{± 0.007}

0.653 _{± 0.006}

0.652 _{± 0.006}

> 0

> 0

1.017 _{± 0.007}

1.005 _{± 0.009}

1.009 _{± 0.008}

1.006 _{± 0.007}

> 0.10

< 0.10

1.002 _{± 0.010}

0.984 _{± 0.011}

1.014 _{± 0.011}

1.013 _{± 0.012}

> 0.10

> 0

1.020 _{± 0.010}

1.030 _{± 0.011}

1.023 _{± 0.010}

1.023 _{± 0.010}

> 0

< 0.10

1.029 _{± 0.010}

1.025 _{± 0.011}

1.043 _{± 0.012}

1.039 _{± 0.013}

> 0.15

< 0.05

1.026 _{± 0.013}

1.056 _{± 0.017}

1.021 _{± 0.014}

1.021 _{± 0.014}