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Table 4 QTL regions associated with cryptorchidism in the Landrace population

From: Genome-wide association study using deregressed breeding values for cryptorchidism and scrotal/inguinal hernia in two pig lines

Chromosome

Position (Mb)

SNP per region

Proportion (%)

SSC1

297.27 – 297.77

4

1.86

SSC3

124.83

1

2.08

SSC4

26.06 - 26.11

2

2.03

SSC4

75.99 – 79.65

15

1.01

SSC5

34.07

1

1.18

SSC6

86.23

2

1.25

SSC6

30.24

1

0.79

SSC6

3.66

1

2.34

SSC7

31.30

1

1.53

SSC7

51.03

1

1.41

SSC7

71.81 – 74.94

9

2.30

SSC8

3.61 – 3.82

2

1.49

SSC8

34.81- 36.22

2

1.70

SSC8

60.77 – 72.81

16

2.23

SSC8

87.00

1

1.39

SSC8

121.33

1

1.04

SSC9

137.13 – 144.94

2

1.74

SSC10

37.87

1

1.21

SSC10

54.50 – 55.68

3

2.77

SSC10

76.17

1

1.37

SSC11

2.68 – 13.27

3

1.24

SSC11

53.48

1

2.10

SSC13

17.67

1

1.46

SSC13

200.75 – 201.80

3

0.71

SSC14

15.42

1

2.04

SSC14

120.99

1

1.24

SSC15

15.08

1

1.59

SSC15

82.48

1

1.20

SSC16

47.25 – 49.84

2

0.48

SSC17

24.01

1

1.13

SSC18

28.17

1

1.09

  1. Significant association using a FDR ≤ 0.20; proportion (%) of the phenotypic variance explained by the most significant SNP per QTL region.