Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

Table 2 Comparison of rEHH signals in candidate regions in non-redundant and redundant dataset

Candidate region	BTA	Pos (bp)	Core haplotype range	Redundant		Non-redundant
				CHFrq	rEHH -log( P ) up/down ¹	CHFrq	rEHH -log( P ) up/down
Polled locus	1	1981154	1897418-1981154	H1:0.79	0.93/0.37	H1:0.78	1.67/1.74
MC1R	18	13657912	13317720-14007505	H1:0.69	1.20/0.96	H1:0.69	0.77/1.67*
KIT_ BOVIN	6	72821175	72504921-72821175	H1:0.54	0.30/0.30	H1:0.54	0.33/0.48
Casein cluster	6	88427760	88350095-88452829	H1:0.47	0.94/1.39*	H1:0.46	1.48/1.33
	6	88427760	88350095-88452829	H2:0.32	0.02/0.03	H2:0.33	0.02/0.03

rEHH in candidate regions in both uncorrected (redundant) and corrected (non-redundant) datasets for population structure; BTA = Bos taurus autosome; CHFrq = core haplotype frequency; ¹up-stream (left) and down-stream (right) of the core haplotype; *significant rEHH (p < 0.05).

ISSN: 1297-9686