Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

Table 3 Distribution of core haplotypes

BTA	Italian Holstein		Italian Brown		Italian Simmental		Marchigiana		Piedmontese
	Hap ²	Sign.Hap ³	Hap ²	Sign.Hap ³	Hap ²	Sign.Hap ³	Hap ²	Sign.Hap ³	Hap ²	Sign.Hap ³
1	1238	66	1228	68	1062	49	988	51	907	46
2	998	47	1040	52	830	44	822	42	735	33
3	913	48	1039	62	780	46	721	34	702	34
4	869	46	868	50	786	41	725	39	697	39
5	696	32	680	29	619	30	543	27	488	22
6	891	51	928	40	820	45	770	38	729	42
7	761	37	807	46	631	39	624	33	661	27
8	835	39	863	38	735	35	710	32	637	31
9	738	37	727	41	649	37	532	22	575	30
10	685	36	722	34	577	25	620	26	498	25
11	816	39	758	34	686	30	637	33	586	25
12	486	24	511	18	477	21	437	25	405	22
13	675	32	602	19	477	18	539	35	424	19
14	554	17	563	25	531	29	423	22	402	19
15	571	31	581	29	468	23	446	13	399	19
16	535	28	602	29	504	25	444	19	380	15
17	524	27	585	29	540	31	429	22	389	16
18	413	18	511	19	356	14	346	10	252	12
19	424	22	436	23	349	16	310	18	295	15
20	578	35	522	33	467	23	387	23	384	17
21	458	23	478	30	356	18	315	21	312	13
22	444	24	451	19	349	21	355	18	316	13
23	325	13	315	16	198	10	186	9	182	8
24	408	11	449	20	396	17	299	23	306	16
25	273	12	271	11	205	10	246	12	214	6
26	379	7	375	14	305	12	275	15	290	16
27	284	12	281	15	235	11	268	12	190	10
28	277	9	298	10	201	10	202	9	183	11
29	315	15	310	13	248	10	215	9	209	12
TOT	17363	838	17801	866	14837	740	13814	692	12747	613

Distribution of total and significant core haplotypes (up- and down-stream) per chromosome and breed; BTA = Bos taurus autosomes; ²number of detected core haplotypes with a frequency in the breed higher than 25%; ³number of significant core haplotypes at p ≤ 0.05.

ISSN: 1297-9686