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Table 2 Summary of significant KEGG pathways and combined pathways

From: Partitioning of genomic variance reveals biological pathways associated with udder health and milk production traits in dairy cattle

  

Number of pathways to pass

Combined pathways

Number of pathways to pass

  

\(H^{2}_{95}\)

L R 95

Both

Number of SNPs

\(H^{2}_{\textit {set}}\)

 

χ 2

FDR

Health traits

        
 

Mastitis 1.1

20

20

18

8590

12.9

 

13

3

 

Mastitis 1.2

10

18

9

7959

11.1

 

12

0

 

Somatic Cell Score

11

8

8

2757

3.6

 

3

0

 

Udder-health

17

22

16

11514

13.7

 

14

1

Production traits

        
 

Fat yield

14

16

14

7639

19.7

 

11

8

 

Milk yield

15

19

14

10695

11.2

 

10

8

 

Protein yield

14

23

13

12076

9.8

 

19

5

  1. The ‘Combined pathways’ combine all markers associated with pathways found significant for each trait into a single pathway. All seven ‘Combined pathways’ were found significant by both L R 95 and \(H^{2}_{95}\). \(H^{2}_{\textit {set}}\): Proportion of explained genomic variance. \(H^{2}_{95}\) and L R 95: Empirical cut-offs for \(H^{2}_{\textit {set}}\) and LR. FDR: Benjamini and Hochberg p-value adjustment
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Genetics Selection Evolution

ISSN: 1297-9686