Genetics Selection Evolution

Table 4 Proportions of shared haplotypes between the reference and validation populations for different imputation scenarios

From: Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels

Validation	Reference	10^a	20^a	30^a	50^a	100^a
LL	LL	0,9965	0,9814	0,9549	0,8838	0,6417
LL	YY	0,5043	0,1836	0,0877	0,0463	0,0141
LL	LL + YY	0,9972	0,9832	0,9556	0,8847	0,6606
YY	YY	0,9967	0,9817	0,9545	0,8825	0,6295
YY	LL	0,6806	0,3419	0,2232	0,1267	0,0364
YY	LL + YY	0.9971	0.9829	0.9589	0.8843	0.6579
Crossbred	LL	0,8579	0,6758	0,5947	0,5016	0,3280
Crossbred	YY	0,8108	0,6132	0,5125	0,4004	0,2765
Crossbred	LL + YY	0,9902	0,9606	0,9135	0,8092	0,5357

^aNumber of consecutive SNP alleles assumed for each haplotype. LL stands for Landrace; YY stands for Yorkshire. All the scenarios were under the imputation strategy of ‘5 K to 8 K’

Back to article page

ISSN: 1297-9686

Contact us

Submission enquiries: gse@inrae.fr
General enquiries: info@biomedcentral.com