Selection of haplotype variables from a high-density marker map for genomic prediction

Table 2 Total number of selected haploblocks to be used in the prediction models of the three traits using Bayesian BLUP or mixture models, according to number of main SNP effects

Main	Protein		Fertility		Mastitis
SNPs ^†	BLUP	4 mixture	BLUP	4 mixture	BLUP	4 mixture
1000	987	988	989	994	991	985
2000	1951	1951	1952	1965	1954	1949
3000	2893	2903	2906	2928	2913	2897
4000	3828	3845	3848	3870	3843	3827
5000	4753	4763	4763	4771	4761	4730
6000	5643	5661	5658	5669	5646	5627
7000	6538	6541	6529	6545	6543	6501
8000	7398	7411	7378	7388	7411	7354
9000	8219	8264	8231	8241	8256	8218
10 000	9043	9101	9061	9078	9067	9037
20 000	16 577	16 686	16 641	16 660	16 584	16 553
30 000	22 958	23 015	23 016	23 017	22 974	22 866
40 000	28 386	28 531	28 468	28 436	28 380	28 349
50 000	33 120	33 189	33 276	33 110	33 092	33 059
492 057	76 062	76 062	76 062	76 062	76 062	76 062

ISSN: 1297-9686