Selection of haplotype variables from a high-density marker map for genomic prediction

Table 3 Total number of haploblock variables to be used in the prediction models of the three traits using Bayesian BLUP or mixture models, according to number of main SNP effects

Main	Protein		Fertility		Mastitis
SNPs ^†	BLUP	4 mixture	BLUP	4 mixture	BLUP	4 mixture
1000	5701	5761	5824	6007	5815	5816
2000	11 479	11 387	11 478	11 657	11 514	11 475
3000	17 012	16 854	17 016	17 258	17 000	17 081
4000	22 464	22 311	22 494	22 720	22 378	22 603
5000	27 777	27 741	27 790	27 976	27 754	27 775
6000	32 956	32 941	33 046	33 232	32 910	32 957
7000	38 223	38 024	38 097	38 222	38 197	37 946
8000	43 166	43 099	42 938	43 121	43 265	42 893
9000	47 838	48 044	47 966	48 076	48 101	47 879
10 000	52 553	52 938	52 697	52 783	52 769	52 573
20 000	95 234	95 882	95 669	95 710	95 459	95 055
30 000	130 572	130 865	131 045	130 969	130 735	129 994
40 000	160 108	160 600	160 355	160 195	160 000	159 680
50 000	185 225	185 603	185 839	185 000	184 935	184 661
492 057	368 709	368 709	368 709	368 709	368 709	368 709

ISSN: 1297-9686