Selection of haplotype variables from a high-density marker map for genomic prediction

Table 5 P-values for the Hotelling-Williams’ t-statistic to test H ₀: the reliability obtained by the model selecting haploblocks is equal to the reliability obtained by the model using all the haploblocks vs. H ₁: the reliabilities are different, according to number of main SNP effects

Main	Protein		Fertility		Mastitis
SNPs ^†	BLUP	4 mixture	BLUP	4 mixture	BLUP	4 mixture
1000	0.00	0.00	0.15	0.01	0.00	0.00
2000	0.00	0.00	0.26	0.01	0.03	0.09
3000	0.03	0.01	0.06	0.16	0.14	0.32
4000	0.15	0.05	0.17	0.36	0.19	0.60
5000	0.34	0.10	0.34	0.49	0.42	0.69
6000	0.55	0.16	0.31	0.51	0.43	0.77
7000	0.60	0.30	0.34	0.57	0.59	0.84
8000	0.79	0.41	0.45	0.79	0.74	0.98
9000	0.74	0.54	0.45	0.79	0.82	0.93
10 000	0.91	0.60	0.54	0.96	0.83	0.85
20 000	0.87	0.93	0.82	0.76	0.98	0.82
30 000	0.85	0.91	0.81	0.93	0.99	0.63
40 000	0.88	0.91	0.76	0.99	0.96	0.72
50 000	0.65	0.98	0.86	0.88	0.87	0.75

ISSN: 1297-9686