Selection of haplotype variables from a high-density marker map for genomic prediction

Table 6 Computing time needed to run the genomic prediction models of the three traits using Bayesian BLUP or mixture models, according to number of main SNP effects

Main	Protein		Fertility		Mastitis
SNP effects	BLUP	4 mixture	BLUP	4 mixture	BLUP	4 mixture
1000	1h 11m	1h 17m	1h 28m	1h 31m	1h 27m	1h 15m
2000	2h 33m	3h 09m	2h 51m	2h 56m	2h 30m	2h 30m
3000	3h 35m	3h 47m	4h 14m	4h 19m	3h 37m	4h 14m
4000	4h 42m	4h 52m	5h 35m	5h 40m	4h 51m	5h 37m
5000	5h 45m	5h 55m	6h 53m	6h 59m	6h 00m	6h 52m
6000	6h 54m	8h 10m	8h 10m	8h 18m	8h 05m	8h 12m
7000	7h 50m	9h 14m	9h 24m	9h 31m	8h 07m	9h 23m
8000	8h 54m	11h 24m	10h 37m	10h 45m	9h 08m	10h 41m
9000	10h 08m	14h 30m	11h 51m	11h 59m	12h 10m	11h 52m
10 000	10h 52m	17h 05m	12h 59m	13h 09m	12h 59m	12h 58m
20 000	19h 59m	19h 56m	23h 44m	23h 50m	23h 38m	27h 42m
30 000	31h 54m	32h 20m	32h 18m	32h 40m	31h 54m	32h 02m
40 000	39h 02m	39h 31m	39h 32m	39h 54m	39h 22m	39h 34m
50 000	45h 16m	45h 46m	45h 51m	46h 11m	45h 22m	45h 44m
492 057	101h 47m	100h 41m	108h 08m	80h 17m	80h 15m	91h 18m

ISSN: 1297-9686