Table 9 Genomic windows with extreme differences in CEh between BB (BB) and TC (TC) cattle
Chr | Region (Mb) | F ST (Rank) | CEh BB | CEh TC | CEh_Diff | Genes | Candidates | Reference |
|---|---|---|---|---|---|---|---|---|
5 | 56.2–56.6 | 0.20 (1) | 4.786 | 2.462 | −2.324 | 20 | INHBE, INHBC (reproduction) | |
19 | 56.6–57.1 | 0.09 (214) | 4.230 | 2.416 | −1.813 | 20 | ATP5H (fatness) | [29] |
3 | 33.2–33.5 | 0.06 (796) | 4.322 | 2.844 | −1.478 | 8 |  |  |
9 | 10.6–10.9 | 0.11 (89) | 3.601 | 2.149 | −1.451 | 1 |  |  |
16 | 25.6–25.9 | 0.03 (1305) | 3.839 | 2.734 | −1.105 | 1 |  |  |
24 | 61.1–62.1 | 0.13 (22) | 2.945 | 2.004 | −0.941 | 6 | BCL2 (immune response) |  |
5 | 56.6–57.8 | 0.10 (174) | 3.789 | 2.887 | −0.902 | 54 | Adaptation traits | |
1 | 132.4–132.6 | 0.06 (231) | 3.144 | 2.268 | −0.876 | 0 |  |  |
21 | 57.4–57.7 | 0.07 (732) | 2.878 | 2.033 | −0.845 | 4 |  |  |
14 | 35.5–37.3 | 0.08 (417) | 1.886 | 2.811 | 0.926 | 10 | NCOA2 (reproduction) | [30] |