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Table 5 QTL with significantly different effects between diets

From: GWAS analyses reveal QTL in egg layers that differ in response to diet differences

QTL

Trait

Chr

Var LE (%)

Var HE (%)

Z Diet

SNP5

EPR

0

5.06

1.16

4.41***

QTL7

EPR

2

5.44

2.61

2.75*

QTL23

EPR

4

4.8

0.54

9.27***

QTL47

EPR

9

4.92

0.53

7.14***

QTL68

EPR

11

0.02

4.41

7.78***

QTL79

EPR

17

2.39

0.83

14.23***

QTL90

EPR

20

4.89

0.01

8.48***

QTL7

EPR1

2

3.86

1.79

22.38***

QTL14

EPR1

3

5.98

2.1

20.68***

QTL28

EPR1

5

3.48

1.01

11.56***

QTL38

EPR1

7

2.64

1.12

18.8***

QTL39

EPR1

7

3.19

2.27

13.72***

QTL40

EPR1

7

3.01

1.37

13.76***

QTL42

EPR1

8

4.15

6.22

14.25***

QTL44

EPR1

9

1.42

3.57

3.74***

QTL46

EPR1

9

0.01

4.18

7.8***

QTL47

EPR1

9

5.52

0.46

7.28***

QTL51

EPR1

9

4.26

2.66

22.76***

QTL71

EPR1

12

0.02

4.26

7.04***

QTL75

EPR1

13

3.27

2.21

19.83***

QTL79

EPR1

17

5.85

1.68

21.41***

QTL90

EPR1

20

7.09

0.21

11.12***

QTL91

EPR1

21

4.2

1.05

12.59***

QTL99

EPR1

23

3.92

0.24

8.92***

QTL110

EPR1

27

3.48

1.19

14.93***

QTL116

EPR1

28

9.68

0

13.09***

QTL7

EPR2

2

4.9

1.84

3.66***

QTL67

EPR2

11

5.07

0.89

4.55***

QTL87

EPR2

20

4.46

0.68

6.46***

SNP4

EPR3

0

6.04

0.95

5.77***

SNP5

EPR3

0

6.87

0.9

6.39***

QTL7

EPR3

2

5.65

0.94

5.42***

QTL26

EPR3

4

3.19

0.07

15.03***

QTL51

EPR3

9

4.57

0.78

18.88***

QTL75

EPR3

13

3.6

1.3

18.47***

QTL90

EPR3

20

4.12

0.03

8.24***

QTL1

ESshape

1

1.88

5.4

3.58***

QTL45

ESshape

9

1.58

4.7

3.44***

QTL84

ESshape

19

1.29

4.11

5.9***

QTL59

EW

10

2.37

4.98

2.74*

QTL15

ESC

3

4.97

1.7

3.16**

QTL74

ESC

13

2.13

4.55

2.96**

QTL83

ESC

19

4.05

1.41

3.13**

QTL69

RSS

12

5.62

2.46

3.82***

QTL83

RSS

19

3.95

1.09

3.37**

QTL117

RSS

LGE22

0.47

2.41

4.97***

QTL13

YSS

3

4.88

2.12

2.87*

QTL15

YSS

3

5.84

1.61

3.98***

QTL16

YSS

3

4.96

1.72

3.45***

QTL52

YSS

9

4.34

0.64

4.43***

QTL56

YSS

10

4.33

0.9

7.3***

QTL82

YSS

19

4.26

0.26

5.93***

QTL11

ESS

2

1.81

5.71

3.84***

QTL102

ESS

24

4.89

1.3

3.01**

QTL117

ESS

LGE22

0.06

4.46

6.14***

QTL4

ESSTIF

1

7.56

2.94

3.45***

QTL85

ESSTIF

20

3.02

1.19

4.38***

QTL46

HU

9

1.22

5.17

3.95***

QTL110

HU

27

1.73

4.49

3.55***

QTL19

EMTSP

3

2.75

4.92

2.77*

QTL87

EMTSP

20

1.24

3.37

4.04***

QTL100

EMTSP

24

1.46

3.91

2.84*

QTL62

YOLKIND

10

5.14

0.89

3.03**

QTL105

YOLKIND

26

4.19

0.64

3.55***

  1. Chr chromosome that carries the QTL, var LE variance explained for the low energy diet, var HE variance explained for the high energy diet, LGE22 linkage group LGE22C19W28_E50C23, Z Diet Z test statistics for QTL × diet interaction
  2. * P < 0.1, ** P < 0.05, *** P < 0.01
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Genetics Selection Evolution

ISSN: 1297-9686