Dataset | Single-breed | Multi-breed | ||||||
---|---|---|---|---|---|---|---|---|
RPÂ =Â 200 | RPÂ =Â 400 | RPÂ =Â 400 | ||||||
TÂ =Â 10 | TÂ =Â 50 | |||||||
SNP-BLUP | MixP | SNP-BLUP | MixP | SNP-BLUP | MixP | SNP-BLUP | MixP | |
45 QTL/Morgan | ||||||||
 WGS data | 0.596 (0.015) | 0.632 (0.018) | 0.696 (0.014) | 0.736 (0.017) | 0.654 (0.013) | 0.710 (0.015) | 0.627 (0.013) | 0.675 (0.019) |
 data3000 | 0.578 (0.016) | 0.598 (0.018) | 0.681 (0.013) | 0.719 (0.015) | 0.578 (0.016) | 0.602 (0.018) | 0.571 (0.016) | 0.592 (0.019) |
 data2000 | 0.576 (0.014) | 0.591 (0.015) | 0.679 (0.013) | 0.713 (0.014) | 0.571 (0.015) | 0.574 (0.016) | 0.564 (0.016) | 0.558 (0.017) |
 data1000 | 0.564 (0.014) | 0.579 (0.015) | 0.668 (0.013) | 0.697 (0.014) | 0.552 (0.017) | 0.551 (0.019) | 0.546 (0.017) | 0.549 (0.017) |
 data200 | 0.473 (0.015) | 0.484 (0.016) | 0.566 (0.014) | 0.576 (0.016) | 0.424 (0.017) | 0.406 (0.017) | 0.428 (0.019) | 0.423 (0.021) |
132 QTL/Morgan | ||||||||
 WGS data | 0.582 (0.014) | 0.587 (0.014) | 0.691 (0.011) | 0.702 (0.012) | 0.647 (0.011) | 0.662 (0.011) | 0.612 (0.014) | 0.624 (0.014) |
 data3000 | 0.575 (0.014) | 0.579 (0.014) | 0.681 (0.010) | 0.688 (0.011) | 0.569 (0.012) | 0.573 (0.013) | 0.573 (0.015) | 0.576 (0.015) |
 data2000 | 0.568 (0.014) | 0.573 (0.014) | 0.670 (0.012) | 0.677 (0.012) | 0.568 (0.012) | 0.570 (0.013) | 0.565 (0.015) | 0.567 (0.015) |
 data1000 | 0.555 (0.015) | 0.562 (0.014) | 0.654 (0.012) | 0.665 (0.012) | 0.537 (0.012) | 0.536 (0.012) | 0.542 (0.016) | 0.521 (0.015) |
 data200 | 0.468 (0.014) | 0.465 (0.014) | 0.568 (0.013) | 0.563 (0.013) | 0.427 (0.017) | 0.416 (0.017) | 0.430 (0.014) | 0.411 (0.014) |