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Table 1 Genes identified, chromosome, name of significant SNPs within QTL regions, P value, minor allele frequency (MAF), and size of QTL in bp

From: A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23

Chra

Gene name

SNP name

P value (FDR = 1 %)

MAF

QTL size (bp)

1

KALRN

BovineHD0100019801

9.44 × 10−8

0.33

12,165

4

DPP6

BovineHD0400033997

7.42 × 10−6

0.45

32,568

  

BovineHD0400033998

7.42 × 10−6

0.45

 

10

AP3B1

BovineHD1000002985

2.23 × 10−6

0.24

13,726

  

BovineHD1000002982

2.43 × 10−6

0.24

 
  

BovineHD1000030516

3.10 × 10−6

0.25

 

23

FKBP5

Hapmap50596-BTA-121389

4.09 × 10−6

0.13

74,693

  1. QTL regions identified in the single-SNP regression analysis applied to GWAS; the top 100 SNPs identified as significant are in Additional file 1: Table S1
  2. aChromosome number
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Genetics Selection Evolution

ISSN: 1297-9686