Table 3 Results of the linkage analysis for RTS-associated hair pigmentation and pigmentation traits within a half-sib backcross (BC) design for each of the two sire sib ships
From: Epistatic interactions between at least three loci determine the “rat-tail” phenotype in cattle
BTA | Trait | Positiona | F value | p value | q value | CI (Mb) | Sire | Locus effect | |
|---|---|---|---|---|---|---|---|---|---|
Est. effect | SE | ||||||||
3 | Hair length variation (HLV) | 83 | 9.35 | 0.0303 | ns | 13.0–113.0 | 2 | −0.63 | 0.20 |
5 | Hair structure (HS) | 20 | 10.93 | 0.0130 | ns | 8.0–105.5 | 1 | −1.01 | 0.31 |
5 | Hair density (HD) | 18 | 14.80 | 0.0033 | ns | 5.0–63.0 | 1 | −0.66 | 0.18 |
5 | Hair length variation (HLV) | 18 | 11.42 | 0.0126 | ns | 4.0–80.0 | 1 | −0.70 | 0.21 |
5 | Level of coat colour dilution (Dilu) | 18 | 11.17 | 0.0116 | ns | 10.0–116.0 | 1 | 0.38 | 0.12 |
5 | RTS classification phenotype (RT) | 49 | 13.16 | 0.0072 | ns | 15.0–65.0 | 1 | −0.67 | 0.18 |
8 | Hair structure (HS) | 44 | 10.49 | 0.0210 | ns | 8.0–107.0 | 1 | −0.99 | 0.30 |
8 | Hair length variation (HLV) | 38 | 10.25 | 0.0201 | ns | 4.0–101.0 | 1 | −0.69 | 0.21 |
8 | RTS classification phenotype (RT) | 13 | 9.01 | 0.0366 | ns | 8.0–94.0 | 1 | −0.56 | 0.19 |
9 | Hair structure (HS) | 90 | 9.20 | 0.0205 | ns | 57.0–98.0 | 2 | 0.74 | 0.25 |
9 | Hair density (HD) | 98 | 7.97 | 0.0371 | ns | 50.0–103.0 | 2 | 0.56 | 0.20 |
9 | Hair length variation (HLV) | 90 | 10.24 | 0.0147 | ns | 35.0–96.0 | 2 | 0.64 | 0.20 |
9 | RTS classification phenotype (RT) | 98 | 8.42 | 0.0326 | ns | 41.0–101.0 | 2 | 0.50 | 0.17 |
10 | Hair structure (HS) | 96 | 18.08 | 0.0011 | 0.0207 | 10.0–98.0 | 1 | 1.24 | 0.29 |
10 | Hair density (HD) | 96 | 12.48 | 0.0076 | ns | 39.0–103.0 | 1 | 0.60 | 0.17 |
10 | RTS classification phenotype (RT) | 94 | 10.51 | 0.0160 | ns | 0.0–103.0 | 1 | 0.61 | 0.19 |
13 | Hair density (HD) | 58 | 14.53 | 0.0026 | ns | 23.0–62.0 | 2 | 0.73 | 0.19 |
13 | RTS classification phenotype (RT) | 42 | 12.47 | 0.0067 | ns | 23.0–70.0 | 2 | 0.59 | 0.17 |
14 | RTS classification phenotype (RT) | 36 | 9.80 | 0.0170 | ns | 13.0–75.0 | 2 | −0.53 | 0.17 |
18 | Hair structure (HS) | 46 | 10.72 | 0.0104 | ns | 0.0–51.0 | 2 | 0.80 | 0.25 |
18 | Hair length variation (HLV) | 43 | 14.55 | 0.0030 | ns | 12.0–48.0 | 2 | 0.76 | 0.20 |
18 | Level of coat colour dilution (Dilu) | 46 | 15.19 | 0.0020 | ns | 40.0–56.0 | 2 | −0.39 | 0.10 |
19 | Hair structure (HS) | 8 | 9.42 | 0.0250 | ns | 7.0–53.0 | 1 | 0.95 | 0.31 |
20 | Hair density (HD) | 70 | 14.05 | 0.0025 | ns | 44.0–70.0 | 2 | −0.71 | 0.19 |
20 | RTS classification phenotype (RT) | 57 | 19.33 | 0.0003 | 0.009 | 46.5–70.0 | 2 | −0.71 | 0.16 |
23 | RTS classification phenotype (RT) | 6 | 9.07 | 0.0192 | ns | 3.0–51.0 | 2 | 0.51 | 0.17 |
25 | Hair structure (HS) | 5 | 10.25 | 0.0127 | ns | 0.0–36.0 | 1 | 0.98 | 0.31 |
25 | Hair density (HD) | 5 | 8.29 | 0.0265 | ns | 2.0–39.0 | 1 | 0.51 | 0.18 |
25 | Hair length variation (HLV) | 5 | 10.19 | 0.0108 | ns | 1.0–36.0 | 1 | 0.67 | 0.21 |
25 | RTS classification phenotype (RT) | 4 | 9.00 | 0.0194 | ns | 0.0–40.0 | 1 | 0.57 | 0.19 |
26 | Hair density (HD) | 36 | 9.01 | 0.0220 | ns | 0.0–48.0 | 1 | −0.53 | 0.18 |
29 | Hair density (HD) | 47 | 8.71 | 0.0226 | ns | 0.0–49.0 | 1 | −0.52 | 0.18 |
29 | RTS classification phenotype (RT) | 47 | 10.51 | 0.0124 | ns | 3.0–49.0 | 1 | −0.60 | 0.19 |