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Table 1 Inbreeding coefficient estimates, linkage disequilibrium and correlations of linkage phase for Landrace and Large White populations

From: Genetic diversity analysis of two commercial breeds of pigs using genomic and pedigree data

 

Landrace

Large White

F x

0.014 (0.0003)

0.021 (0.0003)

F ROH

0.094 (0.0006)

0.106 (0.0007)

F SNP

0.668 (0.0005)

0.667 (0.0512)

r 2

0.459 (0.002)

0.497 (0.002)

r

0.770

  1. Numbers presented are the average and its standard error; F x = pedigree-based inbreeding coefficient; F ROH = genomic inbreeding based on runs of homozygosity (ROH); F SNP = genomic inbreeding based on the proportion of SNPs that are homozygous (SNP-by-SNP); r 2 = linkage disequilibrium among adjacent SNPs; r = correlations of linkage phase