A decade of pig genome sequencing: a window on pig domestication and evolution

Table 1 Pig whole-genome resequencing: overview of pig short read Illumina sequences deposited in the European Nucleotide Archive (1-9-2015)

Accession	Species	Pig breeds/populations	Publications	Number of individuals
PRJEB1683	Ssc, Svr, Sba, Sce, Scb, Paf	EWB, AWB, DU, HA, PI, LR, LW, XI, JQ, MS	[8, 12, 14]	77
PRJNA144099	Ssc	WZ	[9]	1
PRJNA41185	Ssc	DU	–	1
PRJNA176189	Ssc	GM	[10]	1
PRJNA231897	Ssc	RC	–	6
PRJNA186497	Ssc	AWB, TWB, PZ, WJ, YN, NJ, JH	[11]	49
PRJNA238851	Ssc	TC	[23]	5
PRJNA260763	Ssc	DU, LR, YM, KWB, LW	[18, 19]	70
PRJEB9115	Ssc	DU^a	–	1
PRJNA213179	Ssc	AWB, BX, EH, HT, LA, LU, MI, GA, SC, TP, YN, WZ	[16]	69
PRJNA221763	Ssc	BK	[25]	3
PRJNA239399	Ssc	MA, DU	[15]	4
PRJNA190683	Ssc	IB	–	1
PRJNA255085	Ssc	EWB, GC, IB, MP	[22]	4
PRJEB9326	Ssc, Scb	PI	[24]	18
PRJEB9922	Ssc, Svr	EWB, ASW, WS, ZA, LS, AS, BB, BK, BS, CM, CS, CA, CT, GO, HA, LB, LI, MA, MW, IB, NS, TA, RE, JQ, XI	[20]	102
PRJNA281548	Ssc	BK	[21]	10

Ssc, Sus scrofa; Svr, Sus verrucosus; Sba, Sus barbatus; Sce, Sus celebensis; Scb, Sus cebifrons; Paf, Phacochoerus africanus, AS, Angler Sattleschwein; AWB, Asian wild boar; BB, Bunte Bentheimer; BK, Berkshire; BS, British Saddleback; BX, Bamaxiang; CA, Calabrese; CM, Chato Murciano; CS, Cinta Senese; CT, Casertana; DU, Duroc; EH, Erhualian; EWB, European wild boar; GA, Gansu; GC, Guatemala Creole pig; GM, Göttingen minipig; GO, Gloucester Old Spot; HA, Hampshire; HT, Hetao; IB, Iberian; JH, Jinhua; JQ, Jiangquhai; KWB, Korean wild boar; LA, Laiwu; LB, Large Black; LE, Leicoma; LI, Linderodsvin; LR, Landrace; LS, Leping Spotted; LU, Luchuan; MI, Min; LW, Large White; MA, Mangalica; MP, 16th century pig; MS, Meishan; MW, Middle White; NJ, Neijiang; NS, Nera Siciliana; PI, Pietrain; PZ, Penzhou; RC, Rongchang; RE, Retinto; SC, Sichuan; TA, Tamworth; TC, Tongcheng; TP, Tibetan pig; TWB, Tibetan wild boar; WJ, Wujin; WS, Wannan Spotted; WZ, Wuzhishan; XI, Xiang; YM, Yucatan miniature pig; YN, Yannan; ZA, Zang
^aShort read sequences of the Duroc pig on which the pig reference genome assembly [8] is based

ISSN: 1297-9686