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Table 1 Number of variants identified per gene and predicted effect on protein sequence

From: Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

Gene name

High impact

Moderate impact

Low impact

Total

Stop gain

Mdel

Mtol

Synonymous

Start gain

TLR1

4

7

19

22

2

54

TLR2

0

5

11

18

2

36

TLR3

0

5

5

7

0

17

TLR4

0

0

1

7

0

8

TLR5

0

8

9

24

0

41

TLR6

0

5

21

13

1

40

TLR7

0

0

4

15

1

20

TLR8

1

5

5

20

1

32

TLR9

0

3

5

12

0

20

TLR10

1

7

16

14

0

38

total

6

45

96

152

7

306

  1. Mdel, variants predicted to have a moderate impact on protein sequence by snpEff and to be deleterious by SIFT; Mtol, variants predicted to have a moderate impact by snpEff and tolerated by SIFT