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Table 1 Ten sequence variants that are compatible with recessive inheritance

From: A frameshift mutation in GON4L is associated with proportionate dwarfism in Fleckvieh cattle

Chr

Position (bp)

NCBI reference ID

Type

Ref

Alt

Affected gene

Effect

3

15,079,217

rs723240647

Indel

C

–

GON4L

p.E1430Kfs66

3

15,713,943*

rs524337907

SNP

G

C

–

–

3

15,713,959*

rs719431247

SNP

G

A

–

–

3

15,737,755*

rs723848297

SNP

C

T

–

–

3

15,737,992*

ss1457237026

Indel

T

–

–

–

3

15,738,245*

rs720131431

Indel

C

–

–

–

3

15,815,016*

rs723370534

SNP

G

A

KCNN3

Intronic

3

15,924,914*

rs717718209

SNP

G

A

KCNN3

Intronic

3

16,046,490*

rs720952332

SNP

T

C

ADAR

Intronic

3

16,131,785

rs715250609

SNP

T

C

TDRD10

Intronic

  1. The chromosomal position (base pairs) of compatible variants was based on the UMD3.1 assembly of the bovine genome. The asterisks indicate eight variants that are polymorphic among 1005 animals from 28 breeds other than Fleckvieh that had been sequenced for the 1000 bull genomes project
  2. Ref reference allele, Alt alternate allele