Whole-genome sequence data uncover loss of genetic diversity due to selection

Table 5 Rate of inbreeding for genetic improvement and conservation (impcons) strategy, based on different types of estimated relationships

Restriction	Data type and estimator	ΔF_A	ΔF_SNP_Yang	ΔF_SNP_Similarity	ΔF_WGS_Yang	ΔF_WGS_Similarity
No restriction	A	0.010	0.022	0.022	0.021	0.020
	SNP_Yang	0.011	0.010	0.014	0.010	0.011
	SNP_Similarity	0.016	0.022	0.010	0.021	*0.006*
	WGS_Yang	0.012	0.011	0.015	0.010	0.013
	WGS_Similarity	0.025	0.030	0.022	0.029	0.010
20 selected	A	0.011	0.026	0.026	0.025	0.022
	SNP_Yang	0.022	0.019	0.022	0.019	0.014
	SNP_Similarity	0.018	0.027	0.011	0.025	*0.003*
	WGS_Yang	0.023	0.020	0.022	0.019	0.016
	WGS_Similarity	0.022	0.028	0.019	0.027	0.011
10 selected	A	0.028	0.052	0.045	0.051	0.029
	SNP_Yang	0.047	0.040	0.047	0.039	0.036
	SNP_Similarity	0.039	0.045	0.024	0.043	0.015
	WGS_Yang	0.044	0.041	0.048	0.040	0.036
	WGS_Similarity	0.035	0.048	0.029	0.048	*0.013*
5 selected	A	0.075	0.107	0.085	0.102	0.069
	SNP_Yang	0.086	0.085	0.088	0.083	0.071
	SNP_Similarity	0.077	0.094	0.057	0.089	*0.045*
	WGS_Yang	0.088	0.083	0.087	0.080	0.072
	WGS_Similarity	0.075	0.101	0.064	0.096	0.045

The lowest estimated rates of inbreeding calculated from each type of estimated relationship matrix depending on the scenario are in italics. The overall lowest value of estimated rate of inbreeding is in italic bold

ISSN: 1297-9686