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Table 1 Summary and annotation of SNPs in YNLCa

From: Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

Categoryb YNLC
Upstream 186,263
Exonic
Stop gain 379
Stop loss 51
Synonymous 126,014
Non-synonymous 51,933
Intronic 5,098,263
Splicing 510
Downstream 163,867
Upstream/downstream 6747
Intergenic 7,515,849
  1. aYNLC: Xishuangbanna fighting chicken
  2. bUpstream: a variant that is located in the 1-kb region upstream of the gene start site; stop gain: a non-synonymous (ns) SNP that leads to the creation of a stop codon at the variant site; stop loss: a non-synonymous SNP that leads to the elimination of a stop codon at the variant site; splicing: a variant within 2 bp of a splice junction; downstream: a variant that is located in the 1-kb region downstream of the gene end site; upstream/downstream: a variant that is located in the downstream and upstream regions of two genes