Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

Table 2 Results from association analyses of SNPs in the candidate gene region

Trait^a	SNP	bp	−log(p)	Freq	Effect	SE	A1	A2
CM1	rs110483492	88,741,762	11.5	0.34	0.007	0.001	G	A
CM4	rs208489948	88,808,884	7.0	0.34	0.005	0.001	T	C
CM6	rs109133718	89,069,508	9.1	0.36	0.008	0.001	C	T
kg milk	rs110483492	88,741,762	12.8	0.34	60.8	8.26	G	A
kg protein	rs385796667	88,804,540	12.8	0.39	1.73	0.23	G	A
kg fat	rs381872595	88,743,767	7.8	0.36	1.91	0.34	Del	Ins

The most significant SNP for each of the traits is shown with its position in base pairs (bp), negative logarithm of the p value [−log(p)], minor allele frequency (Freq), allele substitution effect for the first allele of the SNP (Effect), standard error of the SNP effect (SE), and alleles
^aCM1, CM4 and CM6: clinical mastitis in the period from −15 to 30 days postpartum in first, second and third lactation, respectively

ISSN: 1297-9686