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Table 2 Different sets of QTL markers selected from within-breed GWAS

From: Sequence variants selected from a multi-breed GWAS can improve the reliability of genomic predictions in dairy cattle

Set

Selection threshold

Number of selected variants

Milk yield

Fat yield

Protein yield

Danish Holstein

    

WBQTL10

10−10

2595

2523

1491

WBQTL12

10−12

1868

1719

612

WBQTL14

10−14

1511

1220

298

French Holstein

    

WBQTL10

10−10

2249

1924

921

WBQTL12

10−12

1382

1108

330

WBQTL14

10−14

958

782

168

Jersey

    

WBQTL4

10−04

14,101

6632

3219

WBQTL6

10−06

2464

578

345

WBQTL8

10−08

677

51

22

Danish Red

    

WBQTL4

10−04

9548

4925

5330

WBQTL6

10−06

873

648

383

WBQTL8

10−08

80

232

12

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Genetics Selection Evolution

ISSN: 1297-9686