Inter- and intra-reproducibility of genotypes from sheep technical replicates on Illumina and Affymetrix platforms

Table 2 Number of SNPs (N) and mean correlation, genotype concordance rate, allele concordance rate for each SNP category designated by Affymetrix

Category	N	Correlation	Genotype concordance rate	Allele concordance rate
PolyHighResolution	37,619	0.9931	0.9913	0.9956
NoMinorHom	2135	0.9912	0.9882	0.9933
Monohigh	972	0.9188	0.9336	0.9518
CallRateBelowThres	4288	0.9624	0.9513	0.9752
OffTargetVariant	463	0.8215	0.6951	0.8454
Other	5641	0.8313	0.8024	0.8933

ISSN: 1297-9686