Trait | Selection criteria | ISQ | HD | 50k | ISQ | HD | 50k | ISQ | HD | 50k |
---|---|---|---|---|---|---|---|---|---|---|
Accuracy | Intercept | Slope | ||||||||
PY | All variants | 0.68 | 0.68 | 0.68 | −0.6 | −0.6 | −0.7 | 0.90 | 0.90 | 0.90 |
−log10(p) > 3 | 0.64 | 0.65 | 0.67 | 1.0 | 1.1 | 0.4 | 0.79 | 0.75 | 0.83 | |
−log10(p) > 5 | 0.67 | 0.69 | 0.69 | 0.2 | −0.5 | −0.6 | 0.84 | 0.90 | 0.91 | |
COJO3 | 0.64 | 1.4 | 0.72 | |||||||
COJO5 | 0.64 | 1.1 | 0.75 | |||||||
COJO5LD | 0.67 | 0.2 | 0.84 | |||||||
COJO#100 | 0.63 | 1.2 | 0.79 | |||||||
SCS | All variants | 0.70 | 0.71 | 0.70 | 100 | 100 | 100 | 1.02 | 1.03 | 1.02 |
−log10(p) > 3 | 0.67 | 0.66 | 0.66 | 100 | 100 | 100 | 0.85 | 0.83 | 0.87 | |
−log10(p) > 5 | 0.67 | 0.69 | 0.69 | 100 | 100 | 100 | 0.93 | 0.99 | 1.00 | |
COJO3 | 0.63 | 100 | 0.76 | |||||||
COJO5 | 0.62 | 100 | 0.73 | |||||||
COJO5LD | 0.65 | 100 | 0.88 | |||||||
COJO#100 | 0.62 | 100 | 0.83 | |||||||
IFL | All variants | 0.60 | 0.60 | 0.60 | 99 | 99 | 99 | 0.88 | 0.87 | 0.87 |
−log10(p) > 3 | 0.55 | 0.56 | 0.58 | 99 | 99 | 99 | 0.73 | 0.71 | 0.80 | |
−log10(p) > 5 | 0.58 | 0.61 | 0.60 | 99 | 99 | 99 | 0.80 | 0.88 | 0.88 | |
COJO3 | 0.51 | 99 | 0.60 | |||||||
COJO5 | 0.51 | 99 | 0.59 | |||||||
COJO5LD | 0.57 | 99 | 0.76 | |||||||
COJO#100 | 0.54 | 99 | 0.70 |