Table 1 Power and L-Powera as a function of the SNP density per M, window size in cM, window posterior probability of association (WPPA) and method (BayesC and BayesD)
SNP density (k/M) | WS | WPPA | BayesC | BayesD | ||
|---|---|---|---|---|---|---|
Power | L-powera | Power | L-powera | |||
0.5 | 0.25 | 0.85 | 0.261 (0.129) | 0.441 (0.199) | 0.282 (0.132) | 0.475 (0.205) |
0.95 | 0.201 (0.107) | 0.347 (0.169) | 0.217 (0.110) | 0.362 (0.154) | ||
0.99 | 0.144 (0.102) | 0.249 (0.166) | 0.175 (0.101) | 0.300 (0.170) | ||
0.5 | 0.85 | 0.267 (0.138) | 0.445 (0.193) | 0.280 (0.120) | 0.480 (0.205) | |
0.95 | 0.205 (0.107) | 0.349 (0.174) | 0.230 (0.103) | 0.388 (0.158) | ||
0.99 | 0.151 (0.094) | 0.260 (0.151) | 0.192 (0.099) | 0.336 (0.182) | ||
1 | 0.85 | 0.279 (0.142) | 0.467 (0.204) | 0.298 (0.135) | 0.500 (0.193) | |
0.95 | 0.214 (0.114) | 0.352 (0.156) | 0.241 (0.102) | 0.410 (0.161) | ||
0.99 | 0.167 (0.092) | 0.285 (0.146) | 0.199 (0.095) | 0.343 (0.165) | ||
1 | 0.25 | 0.85 | 0.265 (0.119) | 0.452 (0.184) | 0.290 (0.112) | 0.500 (0.186) |
0.95 | 0.210 (0.114) | 0.365 (0.194) | 0.241 (0.101) | 0.415 (0.173) | ||
0.99 | 0.193 (0.112) | 0.337 (0.196) | 0.180 (0.091) | 0.315 (0.157) | ||
0.5 | 0.85 | 0.291 (0.121) | 0.495 (0.190) | 0.321 (0.123) | 0.551 (0.204) | |
0.95 | 0.228 (0.116) | 0.394 (0.199) | 0.265 (0.108) | 0.454 (0.180) | ||
0.99 | 0.192 (0.106) | 0.334 (0.174) | 0.198 (0.088) | 0.344 (0.151) | ||
1 | 0.85 | 0.316 (0.128) | 0.538 (0.208) | 0.341 (0.139) | 0.580 (0.213) | |
0.95 | 0.259 (0.116) | 0.438 (0.171) | 0.291 (0.125) | 0.497 (0.204) | ||
0.99 | 0.216 (0.119) | 0.369 (0.183) | 0.227 (0.096) | 0.388 (0.145) | ||
2 | 0.25 | 0.85 | 0.285 (0.126) | 0.481 (0.176) | 0.299 (0.126) | 0.501 (0.169) |
0.95 | 0.247 (0.115) | 0.423 (0.172) | 0.245 (0.107) | 0.419 (0.155) | ||
0.99 | 0.216 (0.109) | 0.367 (0.159) | 0.214 (0.106) | 0.325 (0.169) | ||
0.5 | 0.85 | 0.332 (0.118) | 0.561 (0.169) | 0.343 (0.129) | 0.571 (0.168) | |
0.95 | 0.276 (0.118) | 0.469 (0.182) | 0.284 (0.115) | 0.476 (0.152) | ||
0.99 | 0.234 (0.119) | 0.395 (0.172) | 0.221 (0.114) | 0.376 (0.176) | ||
1 | 0.85 | 0.348 (0.130) | 0.586 (0.181) | 0.371 (0.141) | 0.618 (0.182) | |
0.95 | 0.312 (0.132) | 0.522 (0.179) | 0.318 (0.117) | 0.532 (0.147) | ||
0.99 | 0.245 (0.123) | 0.406 (0.178) | 0.248 (0.121) | 0.420 (0.172) | ||
7 | 0.25 | 0.85 | 0.307 (0.120) | 0.518 (0.185) | 0.301 (0.093) | 0.505 (0.164) |
0.95 | 0.273 (0.097) | 0.467 (0.156) | 0.263 (0.092) | 0.449 (0.166) | ||
0.99 | 0.259 (0.090) | 0.435 (0.146) | 0.256 (0.075) | 0.393 (0.146) | ||
0.5 | 0.85 | 0.356 (0.107) | 0.602 (0.172) | 0.369 (0.099) | 0.615 (0.168) | |
0.95 | 0.309 (0.102) | 0.518 (0.161) | 0.312 (0.093) | 0.531 (0.142) | ||
0.99 | 0.270 (0.089) | 0.459 (0.165) | 0.273 (0.089) | 0.460 (0.135) | ||
1 | 0.85 | 0.378 (0.118) | 0.636 (0.152) | 0.394 (0.106) | 0.657 (0.137) | |
0.95 | 0.329 (0.116) | 0.551 (0.156) | 0.339 (0.103) | 0.567 (0.152) | ||
0.99 | 0.281 (0.109) | 0.465 (0.151) | 0.279 (0.095) | 0.472 (0.155) | ||