Fig. 1
From: Selecting sequence variants to improve genomic predictions for dairy cattle
Accuracy of imputing sequence variants. Test 1 included 762,588 candidate SNPs. Test 2 included candidate SNPs plus 249,966 InDels for a total of 1,003,453 variants. Test 3 included candidate SNPs, InDels, and intergenic and intronic variants for a total of 3,148,506 variants. Chromosome 30 refers to the pseudo-autosomal region of chromosome X, and chromosome 31 refers to X-specific loci