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Fig. 3 | Genetics Selection Evolution

Fig. 3

From: Genome-wide association study and accuracy of genomic prediction for teat number in Duroc pigs using genotyping-by-sequencing

Fig. 3

Manhattan plots from three methods of genome-wide association analysis. a Manhattan plot of p values for testing additive SNP effects using the generalized least squares (GLS) analysis of EPISNP2. b Manhattan plot of p values for testing dominance SNP effects using the generalized least squares (GLS) analysis of EPISNP2. c Manhattan plot of p values for testing additive SNP effects using the least squares (LS) analysis of PLINK with the first 35 dimensions of multidimensional scaling (MDS) as fixed effects. d Manhattan plot of p values for testing additive SNP effects using the LS analysis of EPISNP1 with the first 35 MDS dimensions as fixed effects. The horizontal green line indicates the genome-wide significance with the Bonferroni correction (p < 10−5.91). All p values in the figures are in log(1/p) scale

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Genetics Selection Evolution

ISSN: 1297-9686