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Fig. 4 | Genetics Selection Evolution

Fig. 4

From: Genome-wide association study and accuracy of genomic prediction for teat number in Duroc pigs using genotyping-by-sequencing

Fig. 4

Analysis of the region between 102.9 and 106.0 Mb on chromosome 7. a Additive SNP effects by the generalized least squares analysis of EPISNP2 and by the least squares analysis of PLINK and EPISNP1, with stratification correction using the first 35 dimensions of multidimensional scaling. b Removal of the genotypic effects of the 14 SNPs with genome-wide significance by fitting these SNPs as fixed effects in the model completely removed all significant effects in this region and also removed the significant effects in the 116-Mb region on chromosome 7. c SNP contribution to genomic heritability and prediction accuracy of the 70 SNPs that are located within the region between 102.9 and 106.0 Mb, showing that the largest contributions originated from SNPs that were within or near the AREL1 and PTGR2 genes. d Linkage disequilibrium between the 21 significant SNPs in the region between 102.9 and 106.0 Mb on chromosome 7 by Haploview

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Genetics Selection Evolution

ISSN: 1297-9686