SNP set | Average \(\widehat{\text{h}}_{{{\text{k}}\upalpha}}^{2}\) per SNP | Ratio | Total \(\widehat{\text{h}}_{{\upalpha{\text{i}}}}^{2}\) |
---|---|---|---|
20,554 SNPs | \({\bar{\text{h}}}_{{\upalpha1}}^{2} = 1.75\;\left( {10^{ - 5} } \right)\) | \({\bar{\text{h}}}_{{\upalpha1}}^{2} /{\bar{\text{h}}}_{{\upalpha2}}^{2} = 1.960\) | \(\widehat{\text{h}}_{{\upalpha1}}^{2} = \, 0.360\) |
20,554 SNPs with all 41,108 SNPs in the mixed model | \({\bar{\text{h}}}_{{\upalpha2}}^{2} = 8.93\;\left( {10^{ - 6} } \right)\) | \({\bar{\text{h}}}_{{\upalpha2}}^{2} /{\bar{\text{h}}}_{{\upalpha3}}^{2} = 0.998\) | \(\widehat{\text{h}}_{{\upalpha2}}^{2} = 0.184\) |
41,108 SNPs | \({\bar{\text{h}}}_{{\upalpha3}}^{2} = 8.95\;\left( {10^{ - 6} } \right)\) | \({\bar{\text{h}}}_{{\upalpha1}}^{2} /{\bar{\text{h}}}_{{\upalpha3}}^{2} = 1.955\) | \(\widehat{\text{h}}_{{\upalpha3}}^{2} = \, 0.368\) |