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Table 5 Validation of the top SNP effects from three multi-trait analyses

From: Multiple-trait QTL mapping and genomic prediction for wool traits in sheep

P valuea

Number of SNPs

FDR %

%-same

SNPs from multi-GWAS

0.05

16

29.3

88

All

105

 

70

SNPs from multi-PP

0.05

19

16.1

100

All

77

 

75

SNPs from multi-LGEBV

0.05

15

36.8

100

All

120

 

74

  1. %-same = percentage of SNPs, which have an effect in the same direction in both the training and validation populations
  2. a P value in the validation population
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Genetics Selection Evolution

ISSN: 1297-9686