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Table 5 Computing time of the different prediction methods for each trait

From: Simultaneous fitting of genomic-BLUP and Bayes-C components in a genomic prediction model

Method

SCC

Fkg

Mkg

Pkg

G-BLUP

00:03:24 (2233.492 MB)

00:02:18 (2233.492 MB)

00:02:31 (2159.716 MB)

00:02:31 (2159.716 MB)

Bayes-C

01:04:06 (1296.312 MB)

01:10:32 (1296.312 MB)

01:14:41 (1296.312 MB)

01:10:36 (1296.312 MB)

GBC

00:03:04 (2474.432 MB)

00:04:51 (2474.436 MB)

00:05:11 (2474.436 MB)

00:04:14 (2474.436 MB)

  1. Memory usage is in parentheses
  2. G-BLUP: genomic BLUP using genomic-based relationship matrix; Bayes-C: a non-linear method that fits zero effects and normal distributions of effects for SNPs; GBC: an iterative method that fits a G-BLUP next to SNP effects with a Bayes-C prior
  3. SCC somatic cell count; Fkg, fat yield, Mkg, milk yield; Pkg, protein yield
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Genetics Selection Evolution

ISSN: 1297-9686