Genetics Selection Evolution

Table 5 Functional annotations of variants included within confidence intervals (±100 kb) of the 34 QTL in the three within-and multi-breed analyses

From: Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle

Functional annotation	Within-breed analyses			Multi-breed analyses
Functional annotation	MON^a	NOR^a	HOL^a	Multi-breed analyses
Intergenic	1514	1465	2676	1971
Intronic	1079	1804	1937	1737
3′ UTR	11	14	69	35
5′ UTR	14	27	16	18
Downstream	710	988	1276	1159
Inframe insertion	0	0	1	0
Missense	25	82	72	56
Splice acceptor	0	0	3	0
Synonymous	30	114	118	91
Upstream	509	1009	612	685
% genic	61.1	73.4	60.5	65.8
% genic non intronic	33.4	40.6	32.0	35.5

^aMontbéliarde (MON), Normande (NOR), and Holstein (HOL) cows

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ISSN: 1297-9686

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