Table 2 Differentially-methylated windows between the selection lines
Chr | Window start (bp) | CpGs | logFC | Adjusted p value | Gene symbol | Gene description |
|---|---|---|---|---|---|---|
1 | 121,257,001 | 4 | − 1.33 | 9.52e − 02 | AP1S2 | Adaptor related protein complex 1 sigma 2 subunit [Source:HGNC Symbol;Acc:HGNC:560] |
1 | 142,947,001 | 4 | − 0.93 | 5.87e − 02 | NALCN | Sodium leak channel, non-selective [Source:CGNC Symbol;Acc:12660] |
1 | 174,158,001 | 7 | − 0.90 | 9.52e − 02 | ||
1 | 188,959,001 | 7 | 1.40 | 5.14e − 02 | DLG2 | Discs, large homolog 2 (Drosophila) [Source:CGNC Symbol;Acc:12965] |
1 | 192,474,001 | 5 | 1.35 | 3.27e − 07 | CAPN5 | Calpain 5 [Source:CGNC Symbol;Acc:479] |
2 | 73,558,001 | 3 | − 2.75 | 8.12e − 02 | ||
2 | 85,911,001 | 12 | 0.80 | 9.52e − 02 | ||
3 | 9,149,001 | 7 | 1.11 | 3.22e − 02 | EHBP1 | EH domain binding protein 1 [Source:CGNC Symbol;Acc:6763] |
3 | 53,750,001 | 7 | 1.31 | 2.73e − 02 | ARFGEF3 | ARFGEF family member 3 [Source:CGNC Symbol;Acc:10361] |
3 | 106,780,001 | 5 | 1.70 | 4.83e − 03 | MTMR9 | Myotubularin related protein 9 [Source:CGNC Symbol;Acc:12476] |
4 | 27,239,001 | 3 | − 0.98 | 9.24e − 02 | ||
5 | 30,875,001 | 3 | − 0.80 | 3.22e − 02 | ||
5 | 57,981,001 | 7 | 1.12 | 7.28e − 02 | C5h14orf166 | Gallus gallus chromosome 5 open reading frame, mRNA. [Source:RefSeq mRNA;Acc:NM_205369] |
5 | 58,733,001 | 12 | 0.99 | 7.79e − 02 | ||
11 | 16,608,001 | 16 | − 1.29 | 5.91e − 02 | ||
14 | 5,936,001 | 11 | − 0.83 | 8.12e − 02 | ||
15 | 6,629,001 | 22 | 1.13 | 3.22e − 02 | USP30 | Ubiquitin specific peptidase 30 [Source:CGNC Symbol;Acc:50370] |
17 | 1,582,001 | 8 | 1.87 | 8.12e − 02 | MRPL41 | Mitochondrial ribosomal protein L41 [Source:CGNC Symbol;Acc:6639] |
17 | 1,582,001 | 8 | 1.87 | 8.12e − 02 | PNPLA7 | Patatin-like phospholipase domain containing 7 [Source:CGNC Symbol;Acc:6632] |
18 | 10,927,001 | 23 | 0.89 | 5.14e − 02 | ARMC7 | Armadillo repeat containing 7 [Source:CGNC Symbol;Acc:6023] |
19 | 58,001 | 3 | − 0.95 | 1.01e − 02 | DDX25 | DEAD-box helicase 25 [Source:HGNC Symbol;Acc:HGNC:18698] |
20 | 11,544,001 | 11 | 1.15 | 3.22e − 02 | ||
23 | 3,692,001 | 5 | 1.38 | 7.28e − 02 | GNL2 | Guanine nucleotide binding protein-like 2 (nucleolar) [Source:CGNC Symbol;Acc:1398] |