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Table 2 Direct mapping of lncRNA transcripts to the genome of another species

From: Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome

Species 1 (in which lncRNAs are captured by RNA-seq libraries)

Species 2 (in which lncRNA can be inferred)

Number of lncRNA models detected within a region of conserved synteny between species 1 and 2, but not captured by the RNA-seq libraries of species 2

Number of lncRNA models from species 1 mapped to the genome of species 2

% of lncRNA models detected by direct genome mapping

Number of intergenic regions in the syntenic blocks conserved between these two species

% of intergenic regions in which a lncRNA from species 1 is inferred in species 2

Cattle

Goat

2593

1213

46.78

5964

20.34

Human

163

20

12.27

886

2.26

Sheep

2939

1219

41.48

5854

20.82

Goat

Cattle

2593

286

11.03

5964

4.8

Human

76

9

11.84

1054

0.85

Sheep

991

164

16.55

4076

4.02

Human

Cattle

163

16

9.82

886

1.81

Goat

76

15

19.74

1054

1.42

Sheep

93

18

19.35

760

2.37

Sheep

Cattle

2939

775

26.37

5854

13.24

Goat

991

507

51.16

4076

12.44

Human

93

15

16.13

760

1.97

  1. The results show that lncRNA transcripts assembled using the RNA-seq libraries of only one species can in many cases be directly mapped to the genome of another species, assuming the lncRNA is located within a region of conserved synteny