Table 1 Location of the 1-Mb regions that explained more than 1% of genetic variance (%Var) for different datasets and the probability of that region having a nonzero effect (P > 0)
From: Genomic prediction of avian influenza infection outcome in layer chickens
Data set | Chromosome | Position (Mb) | Number of SNPs | %Var | P > 0b |
|---|---|---|---|---|---|
Mexico Hy-Line1a | 1 | 126 | 306 | 32.1 | 1.0 |
Mexico Hy-Line2 | 1 | 126 | 306 | 28.1 | 1.0 |
Mexico Hy-Line2 | 29 | 0 | 5583 | 1.0 | 1.0 |
Mexico Hy-Line3 | 1 | 126 | 306 | 27.1 | 1.0 |
Mexico Hy-Line3 | 12 | 12 | 608 | 2.9 | 0.7 |
Mexico Hy-Line3 | 29 | 0 | 5583 | 1.2 | 1.0 |
Mexico Hy-Line4 | 1 | 126 | 306 | 28.8 | 1.0 |
Mexico Hy-Line4 | 4 | 69 | 340 | 1.4 | 0.6 |
Mexico Hy-Line5 | 1 | 126 | 306 | 26.0 | 1.0 |
US Hy-Line1 | 1 | 167 | 438 | 3.0 | 0.5 |
US Hy-Line1 | 20 | 3 | 615 | 1.1 | 0.5 |
US Hy-Line1 | 13 | 11 | 561 | 1.0 | 0.5 |
US Hy-Line1 | 1 | 166 | 352 | 1.0 | 0.4 |
US Hy-Line2 | 15 | 1 | 659 | 1.7 | 0.6 |
US Hy-Line2 | 15 | 0 | 422 | 1.1 | 0.5 |
US Hy-Line2 | 29 | 0 | 5583 | 1.0 | 1.0 |
US Hy-Line3 | 1 | 32 | 283 | 2.0 | 0.4 |
US Hy-Line3 | 15 | 1 | 659 | 1.9 | 0.6 |
US Hy-Line3 | 15 | 0 | 422 | 1.1 | 0.5 |
US Hy-Line4 | 1 | 71 | 364 | 1.0 | 0.4 |
US Hy-Line4 | 29 | 0 | 5583 | 1.0 | 1.0 |
US Hy-Line5 | 4 | 84 | 433 | 3.4 | 0.4 |
US Hy-Line5 | 1 | 167 | 438 | 2.3 | 0.5 |
US Hy-Line5 | 9 | 16 | 629 | 1.2 | 0.5 |
US Hy-Line All | 7 | 28 | 497 | 3.0 | 0.4 |
US Hy-Line All | 1 | 32 | 283 | 1.7 | 0.4 |
US Hy-Line All | 9 | 16 | 629 | 1.1 | 0.5 |
US Hy-Line All | 1 | 167 | 438 | 1.1 | 0.4 |