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Table 4 Summary of CNVR per chromosome for all panels

From: Detection of copy number variations in brown and white layers based on genotyping panels with different densities

Chr Chr length (Mb) Merged CNVRa Merged CNVR N ≥ 2b Intersected CNVR N ≥ 2c
Number Number Fraction of chr coveredd Number Fraction of chr coveredd Genese
1 195.3 544 234 0.370 378 0.111 0.050
2 148.8 435 186 0.322 264 0.101 0.036
3 110.4 317 138 0.321 192 0.089 0.036
4 90.2 258 113 0.389 172 0.103 0.042
5 59.6 184 85 0.394 136 0.145 0.076
6 35.0 135 59 0.362 87 0.107 0.064
7 36.2 86 46 0.522 96 0.178 0.100
8 28.8 79 38 0.429 68 0.128 0.061
9 23.4 63 37 0.497 67 0.192 0.091
10 19.9 72 38 0.452 63 0.148 0.078
11 19.4 55 27 0.432 51 0.112 0.061
12 19.9 54 27 0.528 58 0.171 0.111
13 17.7 61 26 0.480 43 0.183 0.084
14 15.1 46 26 0.457 47 0.164 0.094
15 12.7 22 18 0.760 55 0.258 0.141
16 0.5 1 1 0.979 2 0.923 0.564
17 10.4 26 16 0.677 44 0.210 0.102
18 11.2 30 18 0.523 39 0.158 0.084
19 10.0 17 12 0.786 40 0.186 0.127
20 14.3 43 20 0.495 39 0.175 0.085
21 6.8 35 17 0.456 30 0.156 0.078
22 4.1 8 5 0.664 17 0.199 0.068
23 5.7 21 13 0.593 28 0.164 0.091
24 6.3 24 12 0.626 28 0.172 0.111
25 2.2 4 5 0.701 16 0.203 0.092
26 5.3 25 16 0.485 22 0.167 0.083
27 5.2 24 18 0.698 27 0.255 0.183
28 4.7 18 13 0.622 30 0.243 0.143
  1. Chr chromosome
  2. aMerged CNVR = All CNVR merged across all lines; 2687 CNVR in total
  3. bCommon CNVR N ≥ 2 = Merged CNVR observed in at least two individuals within a line, merged across all lines; 1264 CNVR in total
  4. cCommon intersected CNVR N ≥ 2 = Intersected CNVR observed in at least two individuals within a line, merged across all lines; 2139 CNVRs in total
  5. dFraction of chromosome covered with CNVR
  6. eFraction of CNVR overlapping with genes